PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S24290.30
Common NameJCGZ_24533, LOC105631227
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family SRS
Protein Properties Length: 288aa    MW: 31221.4 Da    PI: 8.5397
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S24290.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702186.11.4e-57792414154
         DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklssaes 96 
                     +  C+dCGn+akk+C+++RCRtCCk rg+dCathvkstWvpa +rrerq+ +  +    +  +    +   kr+re+    +++++s ++s++++
  Jcr4S24290.30  79 SSRVCRDCGNRAKKECEYRRCRTCCKGRGYDCATHVKSTWVPAVRRRERQSVNGGSGGGGSCGSssgGACGGKRPREN---VTTTSNSFSTSNNNA 171
                    5678*********************************************99988776554444433455566777765...334444444444444 PP

         DUF702  97 kkeletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     +++++ +            lP++v+++avfrc+rv++++ ge+e+aYq+ v+i+GhvfkG+LydqG++e
  Jcr4S24290.30 172 ATSFNFDNgsnyqdasfkqsLPSQVQAPAVFRCIRVTTINGGEAEVAYQAMVNISGHVFKGFLYDQGIDE 241
                    44444444446777888889***********************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.0E-5581240IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.9E-2582124IPR006510Zinc finger, lateral root primordium type 1
Gene3DG3DSA:2.30.27.108.6E-5109168No hitNo description
TIGRFAMsTIGR016245.0E-25192239IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MLGLHNIFFI APPPSSSATF QHQQPISSSH QITTTINDQC NISNNQDSWT TLKRYQQESS  60
FAKKDAFNIG EYNENSDSSS RVCRDCGNRA KKECEYRRCR TCCKGRGYDC ATHVKSTWVP  120
AVRRRERQSV NGGSGGGGSC GSSSGGACGG KRPRENVTTT SNSFSTSNNN AATSFNFDNG  180
SNYQDASFKQ SLPSQVQAPA VFRCIRVTTI NGGEAEVAYQ AMVNISGHVF KGFLYDQGID  240
EKNLFPCISK VPSGGRNRES TSPIVDPPNA CPASGCQRLL EGKAFATE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068664.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 isoform X1
RefseqXP_012068665.10.0PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2
SwissprotQ94CK96e-52LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A067L8V10.0A0A067L8V1_JATCU; Uncharacterized protein
STRINGPOPTR_0001s06500.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.28e-49Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]